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## weka.filters
Class Filter

    java.lang.Object
      weka.filters.Filter

All Implemented Interfaces:
  java.io.Serializable

Direct Known Subclasses:
  AbstractTimeSeries, Add, AddCluster, AddExpression, AddNoise, AllFilter, AttributeSelection, ChangeDateFormat, ClassOrder, ClusterMembership, Copy, Discretize, FirstOrder, MakeIndicator, MergeTwoValues, NominalToBinary, NominalToBinary, NonSparseToSparse, Normalize, NullFilter, NumericTransform, Obfuscate, PotentialClassIgnorer, Randomize, RandomProjection, Remove, RemoveFolds, RemoveMisclassified, RemovePercentage, RemoveRange, RemoveType, RemoveUseless, RemoveWithValues, Resample, Resample, SparseToNonSparse, SpreadSubsample, StratifiedRemoveFolds, StringToNominal, StringToWordVector, SwapValues

    public abstract class Filter

extends java.lang.Object
implements java.io.Serializable

An abstract class for instance filters: objects that take instances as input, carry out some transformation on the instance and then output the instance. The method implementations in this class assume that most of the work will be done in the methods overridden by subclasses.

A simple example of filter use. This example doesn't remove instances from the output queue until all instances have been input, so has higher memory consumption than an approach that uses output instances as they are made available:

``

      Filter filter = ..some type of filter..
      Instances instances = ..some instances..
      for (int i = 0; i < data.numInstances(); i++) {
        filter.input(data.instance(i));
      }
      filter.batchFinished();
      Instances newData = filter.outputFormat();
      Instance processed;
      while ((processed = filter.output()) != null) {
        newData.add(processed);
      }
      ..do something with newData..

Version:
  $Revision: 5077 $
Author:
  Len Trigg (trigg@cs.waikato.ac.nz)
See Also:
  Serialized Form

Constructor Summary
`Filter()`

Method Summary
`static void` | `batchFilterFile(Filter filter, java.lang.String[] options)` Method for testing filters ability to process multiple batches.
`boolean` | `batchFinished()` Signify that this batch of input to the filter is finished.
`static void` | `filterFile(Filter filter, java.lang.String[] options)` Method for testing filters.
`Instances` | `getOutputFormat()` Gets the format of the output instances.
`boolean` | `input(Instance instance)` Input an instance for filtering.
`boolean` | `inputFormat(Instances instanceInfo)` Deprecated. use `setInputFormat(Instances)` instead.
`boolean` | `isOutputFormatDefined()` Returns whether the output format is ready to be collected
`static void` | `main(java.lang.String[] args)` Main method for testing this class.
`int` | `numPendingOutput()` Returns the number of instances pending output
`Instance` | `output()` Output an instance after filtering and remove from the output queue.
`Instances` | `outputFormat()` Deprecated. use `getOutputFormat()` instead.
`Instance` | `outputPeek()` Output an instance after filtering but do not remove from the output queue.
`boolean` | `setInputFormat(Instances instanceInfo)` Sets the format of the input instances.
`static Instances` | `useFilter(Instances data, Filter filter)` Filters an entire set of instances through a filter and returns the new set.

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### Filter

    public Filter()

Method Detail

### inputFormat

    public boolean inputFormat(Instances instanceInfo)
                        throws java.lang.Exception

  Deprecated. use `setInputFormat(Instances)` instead.

  Throws:
    `java.lang.Exception`

### setInputFormat

    public boolean setInputFormat(Instances instanceInfo)
                           throws java.lang.Exception

  Sets the format of the input instances. If the filter is able to determine the output format before seeing any input instances, it does so here. This default implementation clears the output format and output queue, and the new batch flag is set. Overriders should call `super.setInputFormat(Instances)`

  Parameters:
    `instanceInfo` - an Instances object containing the input instance structure (any instances contained in the object are ignored - only the structure is required).
  Returns:
    true if the outputFormat may be collected immediately
  Throws:
    `java.lang.Exception` - if the inputFormat can't be set successfully

### outputFormat

    public Instances outputFormat()

  Deprecated. use `getOutputFormat()` instead.

### getOutputFormat

    public Instances getOutputFormat()

  Gets the format of the output instances. This should only be called after input() or batchFinished() has returned true. The relation name of the output instances should be changed to reflect the action of the filter (eg: add the filter name and options).

  Returns:
    an Instances object containing the output instance structure only.
  Throws:
    `java.lang.NullPointerException` - if no input structure has been defined (or the output format hasn't been determined yet)

### input

    public boolean input(Instance instance)
                  throws java.lang.Exception

  Input an instance for filtering. Ordinarily the instance is processed and made available for output immediately. Some filters require all instances be read before producing output, in which case output instances should be collected after calling batchFinished(). If the input marks the start of a new batch, the output queue is cleared. This default implementation assumes all instance conversion will occur when batchFinished() is called.

  Parameters:
    `instance` - the input instance
  Returns:
    true if the filtered instance may now be collected with output().
  Throws:
    `java.lang.NullPointerException` - if the input format has not been defined.
    `java.lang.Exception` - if the input instance was not of the correct format or if there was a problem with the filtering.

### batchFinished

    public boolean batchFinished()
                          throws java.lang.Exception

  Signify that this batch of input to the filter is finished. If the filter requires all instances prior to filtering, output() may now be called to retrieve the filtered instances. Any subsequent instances filtered should be filtered based on setting obtained from the first batch (unless the inputFormat has been re-assigned or new options have been set). This default implementation assumes all instance processing occurs during inputFormat() and input().

  Returns:
    true if there are instances pending output
  Throws:
    `java.lang.NullPointerException` - if no input structure has been defined,
    `java.lang.Exception` - if there was a problem finishing the batch.

### output

    public Instance output()

  Output an instance after filtering and remove from the output queue.

  Returns:
    the instance that has most recently been filtered (or null if the queue is empty).
  Throws:
    `java.lang.NullPointerException` - if no output structure has been defined

### outputPeek

    public Instance outputPeek()

  Output an instance after filtering but do not remove from the output queue.

  Returns:
    the instance that has most recently been filtered (or null if the queue is empty).
  Throws:
    `java.lang.NullPointerException` - if no input structure has been defined

### numPendingOutput

    public int numPendingOutput()

  Returns the number of instances pending output

  Returns:
    the number of instances pending output
  Throws:
    `java.lang.NullPointerException` - if no input structure has been defined

### isOutputFormatDefined

    public boolean isOutputFormatDefined()

  Returns whether the output format is ready to be collected

  Returns:
    true if the output format is set

### useFilter

    public static Instances useFilter(Instances data,
                                      Filter filter)
                               throws java.lang.Exception

  Filters an entire set of instances through a filter and returns the new set.

  Parameters:
    `data` - the data to be filtered
    `filter` - the filter to be used
  Returns:
    the filtered set of data
  Throws:
    `java.lang.Exception` - if the filter can't be used successfully

### filterFile

    public static void filterFile(Filter filter,
                                  java.lang.String[] options)
                           throws java.lang.Exception

  Method for testing filters.

  Parameters:
    `argv` - should contain the following arguments:
    -i input_file
    -o output_file
    -c class_index
    or -h for help on options
  Throws:
    `java.lang.Exception` - if something goes wrong or the user requests help on command options

### batchFilterFile

    public static void batchFilterFile(Filter filter,
                                       java.lang.String[] options)
                                throws java.lang.Exception

  Method for testing filters ability to process multiple batches.

  Parameters:
    `argv` - should contain the following arguments:
    -i (first) input file
    -o (first) output file
    -r (second) input file
    -s (second) output file
    -c class_index
    or -h for help on options
  Throws:
    `java.lang.Exception` - if something goes wrong or the user requests help on command options

### main

    public static void main(java.lang.String[] args)

  Main method for testing this class.

  Parameters:
    `argv` - should contain arguments to the filter: use -h for help

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